somatic_dna_wdl
Public
NYGC Somatic Pipeline v7
Source
| Source | Size | ||
|---|---|---|---|
| alignment_analysis | |||
| annotate | |||
| archive | |||
| baf | |||
| calling | |||
| config | |||
| diagrams | |||
| example | |||
| germline | |||
| merge_bed | |||
| merge_vcf | |||
| pandoc | |||
| pre_process | |||
| tasks | |||
| test | |||
| tools | |||
| variant_analysis | |||
| .gitignore | 13 B | ||
| alignment_analysis_wkf.wdl | 4.62 KB | ||
| ancestry_wkf.wdl | 3.15 KB | ||
| annotate_cnv_sv_wkf.wdl | 2.78 KB | ||
| bam_to_cram_wkf.wdl | 829 B | ||
| calling_wkf.wdl | 6.49 KB | ||
| dependencies.zip | 149.34 KB | ||
| filter_intervals.wdl | 3.11 KB | ||
| gdc_wkf.wdl | 2.32 KB | ||
| germline_wkf.wdl | 10.46 KB | ||
| kourami_wkf.wdl | 1.76 KB | ||
| merge_exome_wgs_vcf_wkf.wdl | 1.77 KB | ||
| merge_vcf_wkf.wdl | 2.70 KB | ||
| pon_merge_wkf.wdl | 877 B | ||
| pon_wkf.wdl | 8.62 KB | ||
| prep_additional_t2t_wkf.wdl | 3.97 KB | ||
| prep_new_build.wdl | 5.12 KB | ||
| prep_new_build_t2t.wdl | 6.75 KB | ||
| prep_new_fasta.wdl | 3.31 KB | ||
| prep_old_build.wdl | 5.26 KB | ||
| prep_old_build_annotation.wdl | 0 B | ||
| preprocessing_wkf.wdl | 6.44 KB | ||
| qc_exome_wkf.wdl | 3.47 KB | ||
| qc_wkf.wdl | 3.55 KB | ||
| README.md | 22.64 KB | ||
| README_pipeline.md | 25.69 KB | ||
| report_mini_wkf.wdl | 4.58 KB | ||
| report_wkf.wdl | 7.73 KB | ||
| somatic_bam_snv_indel_wkf.wdl | 11.76 KB | ||
| somatic_bam_wkf.wdl | 33.06 KB | ||
| somatic_wkf.wdl | 37.79 KB | ||
| tests_wkf.wdl | 3.76 KB | ||
| variant_analysis_wkf.wdl | 1.59 KB | ||
| wdl_structs.wdl | 7.91 KB | ||