somatic_dna_wdl
Public
NYGC Somatic Pipeline v7
Browse
| Source | Size | ||
|---|---|---|---|
| alignment_analysis | |||
| annotate | |||
| archive | |||
| baf | |||
| calling | |||
| config | |||
| diagrams | |||
| example | |||
| germline | |||
| merge_bed | |||
| merge_vcf | |||
| nygc_pipe_segments | |||
| pandoc | |||
| pre_process | |||
| tasks | |||
| test | |||
| tools | |||
| variant_analysis | |||
| .gitignore | 13 B | ||
| bam_to_cram_wkf.wdl | 829 B | ||
| dependencies.zip | 380.52 KB | ||
| filter_intervals.wdl | 3.11 KB | ||
| gdc_wkf.wdl | 2.32 KB | ||
| ichor_cna_wkf.wdl | 3.48 KB | ||
| kourami_wkf.wdl | 1.76 KB | ||
| make_paired_high_confidence_vcf_wkf.wdl | 1.73 KB | ||
| merge_by_patient_vcf_wkf.wdl | 4.34 KB | ||
| merge_centers_exome_vcf_wkf.wdl | 6.28 KB | ||
| merge_centers_vcf_wkf.wdl | 4.34 KB | ||
| merge_centers_w_exome_vcf_wkf.wdl | 4.62 KB | ||
| merge_exome_wgs_vcf_wkf.wdl | 1.77 KB | ||
| nygc_somatic_wkf.wdl | 44.91 KB | ||
| pon_merge_wkf.wdl | 877 B | ||
| pon_wkf.wdl | 7.80 KB | ||
| preprocessing_wkf.wdl | 12.93 KB | ||
| qc_exome_wkf.wdl | 3.47 KB | ||
| qc_wkf.wdl | 3.53 KB | ||
| quick_high_lambda_biqseq2.wdl | 16.08 KB | ||
| README.md | 24.56 KB | ||
| README_pipeline.md | 25.85 KB | ||
| report_wkf.wdl | 5.49 KB | ||
| telomeasures_wkf.wdl | 3.98 KB | ||
| tests_wkf.wdl | 3.76 KB | ||
| variant_cram_wkf.wdl | 2.68 KB | ||
| wdl_structs.wdl | 8.78 KB | ||