Computational Biology
  1. Computational Biology

telomeasure_wdl

Public
  1. Computational Biology
  2. telomeasure_wdl

Commits

AuthorCommitMessageCommit dateIssues
Jennifer SheltonJennifer Shelton
561594c09b3fix: increase TelFusDetectorCaller runtimechange sep
Jennifer SheltonJennifer Shelton
6210b3f3ebbfeat: add ucp ratio script
Jennifer SheltonJennifer Shelton
ef3438fac4aMpull changesMerge branch 'main' of https://bitbucket.nygenome.org/scm/compbio/telomeasure_wdl
Jennifer SheltonJennifer Shelton
b8d8826e528feat: add TelFusDetector and UnClippedPercent workflow
Jennifer SheltonJennifer Shelton
094d40a5d7afeat: Dockerfile
Jennifer SheltonJennifer Shelton
122ab94d963feat: updated dependencies
Jennifer SheltonJennifer Shelton
243b52bcbf9fix: update permissions
Jennifer SheltonJennifer Shelton
f7a7d933979fix: restart automatic duplicate countingprint empty table if coverage is too low for a length estimate
Jennifer SheltonJennifer Shelton
042c03ac524doc: add usage note
Jennifer SheltonJennifer Shelton
c2c5f89021cfeat: will accept Exome BAM inputwithout failing when no coverage is found in some GC matched regions NOTE: Exome BAMs have not been shown to produce consistent or reliable results
Jennifer SheltonJennifer Shelton
2642548e0b2feat: will accept Exome BAM inputwithout failing when no coverage is found in some GC matched regions NOTE: Exome BAMs have not been shown to produce consistent or reliable results
Jennifer SheltonJennifer Shelton
a5a25475b6efeat: run telseq length estimate
Jennifer SheltonJennifer Shelton
526a61dae1aadded simple telomeasure with trimming
James RocheJames Roche
5ee5e894ce9move relative imports
Jennifer SheltonJennifer Shelton
6a21ec09e73feat: parameter setting for unClippedPercent
Jennifer SheltonJennifer Shelton
0bd0f5608dffix: typo
Jennifer SheltonJennifer Shelton
a3fcb9ca019feat: added alignment to assemble telomeres
Jennifer SheltonJennifer Shelton
95831ce64e9Docs: updated README
Jennifer SheltonJennifer Shelton
115ac667a07docs: update diagram
Jennifer SheltonJennifer Shelton
428272241b7fix: typo
Jennifer SheltonJennifer Shelton
1db279616bffeat: filter for min 2 sequential canonical or non-canonical telomeric repeats
Jennifer SheltonJennifer Shelton
46e58fe3c54feat: minor updates for python3
Jennifer SheltonJennifer Shelton
d678297e2e1init: telomeasure wdl workflow