 Rajeeva Musunuri | 7a11bea6b1d | add LICENSE file | | |
Rajeeva Musunuri | b913f6a5220M | Merge branch 'master' of https://bitbucket.nygenome.org/scm/compbio-internal/lancet2_manuscript* 'master' of https://bitbucket.nygenome.org/scm/compbio-internal/lancet2_manuscript:
add freebayes docker image | | |
Rajeeva Musunuri | e2bc0e36f1d | update postprocess script to handle freebayes pileups | | |
Rajeeva Musunuri | bf675a7aeaa | add freebayes docker image | | |
Rajeeva Musunuri | dcf7448f11e | add truthset vaf dist plot | | |
Rajeeva Musunuri | 70806d622d0 | fix mutect vaf postprocess | | |
Rajeeva Musunuri | 50020b9da4d | add truth name to report title | | |
Rajeeva Musunuri | 46ae073aa84 | add truth name to report title | | |
Rajeeva Musunuri | f7313897367 | use same colors for tools | | |
Rajeeva Musunuri | f93e75878cd | change margin | | |
Rajeeva Musunuri | 1b0937d0e7f | add margin between plots | | |
Rajeeva Musunuri | 96489577afc | use same font | | |
Rajeeva Musunuri | c7f76192df3 | add validation rate plots to report | | |
Rajeeva Musunuri | 8156552ed3b | reorder | | |
Rajeeva Musunuri | 682a75643a3 | tweak colors | | |
Rajeeva Musunuri | bd9b2490c49 | tweak colors | | |
Rajeeva Musunuri | 27dc1479c4c | move colors to top, change fp color again | | |
Rajeeva Musunuri | 07a7c5f2154 | change fp color | | |
Rajeeva Musunuri | aa9235c01db | fix bug | | |
Rajeeva Musunuri | fd7a1bbf4d6 | add window reload onclick | | |
Rajeeva Musunuri | 3d497f6d817 | handle zero count cases | | |
Rajeeva Musunuri | 52a7e633be2 | use stratification filter | | |
Rajeeva Musunuri | 05251e115e7 | fix pr curves by rounding norm tool scores | | |
Rajeeva Musunuri | ddc05af9791 | add height and without width | | |
Rajeeva Musunuri | cbc8144b7f3 | make plots responsive to width | | |
Rajeeva Musunuri | 8fb94dd61d7 | multiple fixes to plots | | |
Rajeeva Musunuri | 259fc131e0f | adjust layout | | |
Rajeeva Musunuri | 9dc58e5cae5 | fix typo | | |
Rajeeva Musunuri | 825c553a70c | fix layout and add all subplot | | |
Rajeeva Musunuri | 07c465bdee2 | add log message | | |
Rajeeva Musunuri | c48f728a3dd | fix typo | | |
Rajeeva Musunuri | e0c0f5ca593 | add make report script | | |
Rajeeva Musunuri | 0054ff6021d | use conda env spec | | |
Rajeeva Musunuri | 07ddd91e6e9 | add call weight to report df | | |
Rajeeva Musunuri | f66792b9fbd | fix bug in filter script | | |
Rajeeva Musunuri | 71db4358089 | add extract pass variant step after filter | | |
Rajeeva Musunuri | b210c12784a | update filter lancet2 variants to use 10 and 13 as cutoffs | | |
Rajeeva Musunuri | 12dd4bb6748 | add requirements.txt file | | |
Rajeeva Musunuri | d51131fcb11 | add install note | | |
Rajeeva Musunuri | e4a5c78a89b | add python stuff to gitignore | | |
Rajeeva Musunuri | ef80142246c | more edits to format | | |
Rajeeva Musunuri | 97a47a99b06 | more edits to format | | |
Rajeeva Musunuri | 0f56ae96e3b | add logging and add more partition cols | | |
Rajeeva Musunuri | 058da5011bc | write one compressed parquet file per dataset | | |
Rajeeva Musunuri | e699463f39a | handle multiallelic sites | | |
Rajeeva Musunuri | f04cc587d10 | minor fix to df | | |
Rajeeva Musunuri | 13d10c4a979 | add script to build report dataframes | | |
Rajeeva Musunuri | 1dbdee55e58 | update inputs and tasks | | |
Rajeeva Musunuri | 073942a5ae8 | set tumor vaf to 0 for svaba only calls which dont have AD | | |
Rajeeva Musunuri | 23a288cfa1d | update script to pre-process truth vcfs | | |
